How to instal rpy2 on mac OS - Library not loaded:
4
This is proving to be very difficult on mac os and python3.
Below is are the paths for R. I have them and pointed to them. So why the problem?
From the command line:
1) which R
/usr/local/bin/R
2) R RHOME
/Library/Frameworks/R.framework/Resources
In python:
import os,sys
sys.path.append('/usr/local/bin/R')
sys.path.append('/Library/Frameworks/R.framework/Resources')
os.environ['R_HOME'] = '/usr/local/bin/R'
import rpy2.robjects as robjects
from rpy2.rinterface._rinterface import (baseenv,
ImportError: dlopen(/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/rpy2/rinterface/_rinterface.cpython-36m-darwin.so, 2): Library not loaded: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libR.dylib
Referenced from: /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/rpy2/rinterface/_rinterface.cpython-36m-darwin.so
Reason: image not found
Here is the rpy2 version:
import rpy2
print(rpy2.__version__)
2.9.4
How I installed:
pip3 install rpy2
Mac Version:
10.14 Mojave
python3 version:
which python3
/Library/Frameworks/Python.framework/Versions/3.6/bin/python3
R version:
R --version
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
python r python-3.x python-3.6 rpy2
asked Nov 13 '18 at 2:43
TampaTampa
22k90201323
add a comment |
4
This is proving to be very difficult on mac os and python3.
Below is are the paths for R. I have them and pointed to them. So why the problem?
From the command line:
1) which R
/usr/local/bin/R
2) R RHOME
/Library/Frameworks/R.framework/Resources
In python:
import os,sys
sys.path.append('/usr/local/bin/R')
sys.path.append('/Library/Frameworks/R.framework/Resources')
os.environ['R_HOME'] = '/usr/local/bin/R'
import rpy2.robjects as robjects
from rpy2.rinterface._rinterface import (baseenv,
ImportError: dlopen(/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/rpy2/rinterface/_rinterface.cpython-36m-darwin.so, 2): Library not loaded: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libR.dylib
Referenced from: /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/rpy2/rinterface/_rinterface.cpython-36m-darwin.so
Reason: image not found
Here is the rpy2 version:
import rpy2
print(rpy2.__version__)
2.9.4
How I installed:
pip3 install rpy2
Mac Version:
10.14 Mojave
python3 version:
which python3
/Library/Frameworks/Python.framework/Versions/3.6/bin/python3
R version:
R --version
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
python r python-3.x python-3.6 rpy2
asked Nov 13 '18 at 2:43
TampaTampa
22k90201323
So, you've focused on R being the issue but you haven't told us anything about the Python configuration. how you installed it? etc. There's a guess due to the error but my python 3.7 is not in/Library. We also don't know your macOS version. I grok the frustration (Python is the source of most if not all evil in the universe) but I think you need to provide more info to get aid.
– hrbrmstr
Nov 13 '18 at 2:53
Any luck with this?
– Nicholas Mancuso
Dec 13 '18 at 22:50
add a comment |
4
4
4
1
This is proving to be very difficult on mac os and python3.
Below is are the paths for R. I have them and pointed to them. So why the problem?
From the command line:
1) which R
/usr/local/bin/R
2) R RHOME
/Library/Frameworks/R.framework/Resources
In python:
import os,sys
sys.path.append('/usr/local/bin/R')
sys.path.append('/Library/Frameworks/R.framework/Resources')
os.environ['R_HOME'] = '/usr/local/bin/R'
import rpy2.robjects as robjects
from rpy2.rinterface._rinterface import (baseenv,
ImportError: dlopen(/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/rpy2/rinterface/_rinterface.cpython-36m-darwin.so, 2): Library not loaded: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libR.dylib
Referenced from: /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/rpy2/rinterface/_rinterface.cpython-36m-darwin.so
Reason: image not found
Here is the rpy2 version:
import rpy2
print(rpy2.__version__)
2.9.4
How I installed:
pip3 install rpy2
Mac Version:
10.14 Mojave
python3 version:
which python3
/Library/Frameworks/Python.framework/Versions/3.6/bin/python3
R version:
R --version
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
python r python-3.x python-3.6 rpy2
asked Nov 13 '18 at 2:43
TampaTampa
22k90201323
This is proving to be very difficult on mac os and python3.
Below is are the paths for R. I have them and pointed to them. So why the problem?
From the command line:
1) which R
/usr/local/bin/R
2) R RHOME
/Library/Frameworks/R.framework/Resources
In python:
import os,sys
sys.path.append('/usr/local/bin/R')
sys.path.append('/Library/Frameworks/R.framework/Resources')
os.environ['R_HOME'] = '/usr/local/bin/R'
import rpy2.robjects as robjects
from rpy2.rinterface._rinterface import (baseenv,
ImportError: dlopen(/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/rpy2/rinterface/_rinterface.cpython-36m-darwin.so, 2): Library not loaded: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libR.dylib
Referenced from: /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/rpy2/rinterface/_rinterface.cpython-36m-darwin.so
Reason: image not found
Here is the rpy2 version:
import rpy2
print(rpy2.__version__)
2.9.4
How I installed:
pip3 install rpy2
Mac Version:
10.14 Mojave
python3 version:
which python3
/Library/Frameworks/Python.framework/Versions/3.6/bin/python3
R version:
R --version
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
python r python-3.x python-3.6 rpy2
python r python-3.x python-3.6 rpy2
asked Nov 13 '18 at 2:43
TampaTampa
22k90201323
asked Nov 13 '18 at 2:43
TampaTampa
22k90201323
edited Nov 13 '18 at 4:02
Tampa
asked Nov 13 '18 at 2:43
TampaTampa
22k90201323
asked Nov 13 '18 at 2:43
TampaTampa
22k90201323
asked Nov 13 '18 at 2:43
TampaTampa
22k90201323
22k90201323
So, you've focused on R being the issue but you haven't told us anything about the Python configuration. how you installed it? etc. There's a guess due to the error but my python 3.7 is not in/Library. We also don't know your macOS version. I grok the frustration (Python is the source of most if not all evil in the universe) but I think you need to provide more info to get aid.
– hrbrmstr
Nov 13 '18 at 2:53
Any luck with this?
– Nicholas Mancuso
Dec 13 '18 at 22:50
add a comment |
So, you've focused on R being the issue but you haven't told us anything about the Python configuration. how you installed it? etc. There's a guess due to the error but my python 3.7 is not in/Library. We also don't know your macOS version. I grok the frustration (Python is the source of most if not all evil in the universe) but I think you need to provide more info to get aid.
– hrbrmstr
Nov 13 '18 at 2:53
Any luck with this?
– Nicholas Mancuso
Dec 13 '18 at 22:50
So, you've focused on R being the issue but you haven't told us anything about the Python configuration. how you installed it? etc. There's a guess due to the error but my python 3.7 is not in
/Library. We also don't know your macOS version. I grok the frustration (Python is the source of most if not all evil in the universe) but I think you need to provide more info to get aid.– hrbrmstr
Nov 13 '18 at 2:53
So, you've focused on R being the issue but you haven't told us anything about the Python configuration. how you installed it? etc. There's a guess due to the error but my python 3.7 is not in
/Library. We also don't know your macOS version. I grok the frustration (Python is the source of most if not all evil in the universe) but I think you need to provide more info to get aid.– hrbrmstr
Nov 13 '18 at 2:53
Any luck with this?
– Nicholas Mancuso
Dec 13 '18 at 22:50
Any luck with this?
– Nicholas Mancuso
Dec 13 '18 at 22:50
add a comment |
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So, you've focused on R being the issue but you haven't told us anything about the Python configuration. how you installed it? etc. There's a guess due to the error but my python 3.7 is not in
/Library. We also don't know your macOS version. I grok the frustration (Python is the source of most if not all evil in the universe) but I think you need to provide more info to get aid.– hrbrmstr
Nov 13 '18 at 2:53
Any luck with this?
– Nicholas Mancuso
Dec 13 '18 at 22:50